日本語
The University of Electro-Communications
Graduate School of Informatics and Engineering, School of Informatics and Engineering
"Department of Computer and Network Engineering, Cluster I (Informatics and Computer Engineering)"
Associate Professor
Shinnosuke SEKI
Personal website
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Career
University of Western Ontario Department of Computer Science Postdoctoral Researcher 2010/09/01-2011/04/30
Kyoto University 薬学研究科 博士研究員 2011/05/01-2012/02/15
Aalto University Department of Information and Computer Science Postdoctoral Researcher 2012/02/16-2013/08/31
Academy of Finland Postdoctoral Researcher, Principal Investigator 2013/09/01-2015/03/31
Ecole Normale Superieure de Lyon Invited Professor 2018/09/01-Present
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Academic background
The University of Electro-Communications 情報工学専攻 Master's program 2006/03/31 Graduated
The University of Western Ontario Department of Computer Science Doctoral program 2010/08/31 Graduated
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Academic degrees
Ph.D. (Computer Science) University of Western Ontario 2010/10/29
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Classes responsible within the university
2022 大学院技術英語 Spring semester Graduate, IE Master's program
2022 情報領域演習第2 Spring semester Undergraduate, daytime
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Classes responsible in other universities
2014 Combinatorics Aalto University
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Education and research activities in foreign countries
Invited Professor at Ecole Normale Superieure de Lyon (ENS Lyon) 2019/04-Present France
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Current research areas
Theory of informatics
Nano/Microsystems
Computational science
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Research keywords
Theory of self-assembly
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Current research subjects
Optimization of DNA pattern self-assembly systems 2012/09/01-Present
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Published books
Book Special issue of Natural Computing devoted to the International Conference on Unconventional Computation and Natural Computation (UCNC 2019) Ian McQuillan and Shinnosuke Seki Springer 2021
Book Special issue of International Journal of Foundations of Computer Science (IJFCS) devoted to Developments in Language Theory 2018 Shinnosuke Seki World Scientific 2020/09
Book Proceedings of the 18th International Conference on Unconventional Computation and Natural Computation (UCNC2019, Tokyo, Japan, June 3-7, 2019) Springer 2019
Book Proceedings of the 22nd International Conference on Developments in Language Theory (DLT2018, Tokyo, Japan, September 10-14, 2018) Springer 2018/08/06
Book, dictionary Encyclopedia of Algorithms Shinnosuke Seki Springer 2016
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Published papers
Paper Yes Linear bounds on the size of the conformations in greedy deterministic oritatami Joint Szilard Zsolt Fazekas, Hwee Kim, Ryuichi Matsuoka, Reoto Morita, and Shinnosuke Seki International Journal of Foundations of Computer Science 32/ 5, 575-596 2021
Paper Yes Counting infinitely by oritatami co-transcriptional folding Joint Kohei Maruyama and Shinnosuke Seki Natural Computing 20/ 2, 329-340 2021
10.1007/s11047-021-09842-6
Paper Yes A general architecture of oritatami systems for simulating arbitrary finite automata Joint Yo-Sub Han, Hwee Kim, Yusei Masuda, and Shinnosuke Seki Theoretical Computer Science 870/ 16, 29-52 2021
Paper Yes Square network on a word Joint Szilard Zsolt Fazekas and Shinnosuke Seki Theoretical Computer Science 894/ 26, 121-134 2021/11
Paper Yes Renewal of the major fields of New Generation Computing Vol. 38 Joint Masayuki Numao, Yutaka Matsuo, and Shinnosuke Seki New Generation Computing 38/ 1, 1-3 2020
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Research presentations
Oral presentation for an academic conference Algorithmic self-assembly of squares in oritatami 2021年度 冬のLAシンポジウム N/A No 松岡 龍一 2021/02/01
Oral presentation for an academic conference Simple intrinsic simulation of cellular automata in oritatami molecular folding model 14th Latin American Symposium on Theoretical Informatics (LATIN 2020) LNCS 12118 Yes Daria Pchelina 2021/01/05
Oral presentation for an academic conference Les oritatamis tracent des dessins indécidables Journées SDA2 2020: Systèmes Dynamiques, Automates et Algorithmes N/A/ N/A Yes Nicolas Schabanel 2020/12/04
Oral presentation for an academic conference Counting infinitely by oritatami co-transcriptional folding SOFSEM2020: 46th International Conference on Current Trends in Theory and Practice of Informatics LNCS 12011 Yes Kohei Maruyama 2020/01/20
Oral presentation for an academic conference A general architecture of oritatami systems for simulating arbitrary finite automata CIAA2019: 24th International Conference on Implementation and Application of Automata LNCS 11601 Yes Shinnosuke Seki 2019/07/22
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Awards
LA/EATCS Best Presentation Award 2018/02/07
CIAA 2016 Best Paper Award (Sheng Yu Award) 2016/07/21
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Researcher accepted
Domestic Visiting researcher Finland Aalto University Dispatching organization 2017-2017
Overseas Visiting researcher Republic of Korea Yonsei University Dispatching organization 2015-Present
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Grants-in-aid for scientific research
文字列の辞書式順序の組合せ論とその応用 "Scientific research (B), general" 2020/04/01-2024/03/31
共転写性フォールディングの本質的計算完全性 "Scientific research (C), general" 2020/04/01-2023/03/31
万能折り畳みシステムの小型化とその限界 2018/06/29-2020/03/31
共転写性フォールディングによる自己組織化システムの実際的設計と最適化 Young scientists (A) 2016/04/01-2018/03/31
共転写性フォールディングの数理モデル化とチューリング完全性 Research activity start-up 2015/04/01-2016/03/31
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External fund
国際会議UCNC2019への助成 Other grants Tateishi Science and Technology Foundation 2018/09/25-2019/06/07
国際会議DLT2018への助成 Other grants National Institute of Information and Communications Technology (NICT) Support for the 22nd International Conference on Developments in Language Theory (DLT 2018) 2018/04/01-Present
国際会議DLT2018への助成 Donations for research (株)久保田情報技研 国際会議DLT2018開催支援寄付金 2017-Present
国際会議DLT2018への助成 Other grants The Telecommunications Advancement Foundation シンポジウム・セミナー 振興普及援助 2017/09/01-Present
機関選抜のため、研究テーマはなし Other grants Japan Science and Technology Agency 2015/08/06-2017/03/31
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Past records of joint or funded research
Self-assembly of computational mechanisms by cotranscriptional folding 2017-Present Joint research International joint research
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Involvement in conference and research meetings
20th International Conference on Unconventional Computation and Natural Computation (UCNC 2023) Program Committee Member 2023/03
9th International Conference on Machines, Computations, and Universality (MCU 2022) Program Committee Member 2022/08/31
28th International Conference on DNA Computing and Molecular Programming Program Committee Member 2022/08/08
27th International Conference on Implementation and Applications of Automata (CIAA 2022) Program Committee Member 2022/06/28
25th International Conference on Developments in Language Theory (DLT 2021) Organizing Committee member 2021/08/16
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Committee or council involvement
Steering Committee of the International Conference on Unconventional Computation and Natural Computation (UCNC) Shinnosuke Seki 2021/10/18-Present
New Generation Computing Editorial Board Shinnosuke Seki 2019/09/01-Present
Springer Natural Computing Book-Series Advisory Board Shinnosuke Seki 2018/04/26-Present
情報処理学会アルゴリズム研究会 関 新之助 2018/04/01-Present
Steering Committee of International Conference on Developments in Language Theory (DLT) Shinnosuke Seki 2017/08/07-Present
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Media coverage
Newspaper 日刊工業新聞 「分子機械、実験・理論研究進む‐1本のひもで計算可能に」というタイトルで、私が提唱したRNAの共転写性フォールディングによる計算の数理モデル「折り畳みシステム」が取り上げられた。 2015/08/11
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Committee activity in the University
2021年度大学院時間割作成WG I専攻とりまとめ 2020/11-Present
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